Crystal structure of the RxLR effector PcRxLR12 from Phytophthora capsici.
Identifieur interne : 000811 ( Main/Exploration ); précédent : 000810; suivant : 000812Crystal structure of the RxLR effector PcRxLR12 from Phytophthora capsici.
Auteurs : Li Zhao [République populaire de Chine] ; Xiuguo Zhang [République populaire de Chine] ; Xuefa Zhang [République populaire de Chine] ; Weiwei Song [République populaire de Chine] ; Xiuqi Li [République populaire de Chine] ; Rui Feng [République populaire de Chine] ; Cancan Yang [République populaire de Chine] ; Zhenling Huang [République populaire de Chine] ; Chunyuan Zhu [République populaire de Chine]Source :
- Biochemical and biophysical research communications [ 1090-2104 ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- composition chimique : Phytophthora, Protéines fongiques.
- Conformation des protéines, Cristallographie aux rayons X, Modèles moléculaires.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Fungal Proteins.
- chemistry : Phytophthora.
- Crystallography, X-Ray, Models, Molecular, Protein Conformation.
Abstract
RxLR genes are a prominent class of effectors in oomycetes, and almost half of these proteins contain a conserved sequence motif termed the WY domain, that may exist singly, or as divergent tandem repeats in different effectors. Here we describe the crystal structure of PcRxLR12 (63-488) from Phytophthora capsici at 3.0 Å resolution. The structure consists of five tandemly arrayed WY-domains linked to each other by short connecting helices. Superposition of the WY-2 domain on the other four domains of PcRxLR12, show that the first α-helix termed the K motif, and Loop 3 which connects α3 and α4 are the key regions of structural divergence between the WY domains. A similar pattern was observed when WY-2 was superposed on the 11 WY domains from other oomycete effectors. We also note that an added connecting helix between WY domains in some RXLR effectors, ensures that the WY domains are oriented in the same direction.
DOI: 10.1016/j.bbrc.2018.07.121
PubMed: 30077372
Affiliations:
Links toward previous steps (curation, corpus...)
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Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an</wicri:regionArea><wicri:noRegion>Tai'an</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Xiuguo" sort="Zhang, Xiuguo" uniqKey="Zhang X" first="Xiuguo" last="Zhang">Xiuguo Zhang</name><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an</wicri:regionArea><wicri:noRegion>Tai'an</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Xuefa" sort="Zhang, Xuefa" uniqKey="Zhang X" first="Xuefa" last="Zhang">Xuefa Zhang</name><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an</wicri:regionArea><wicri:noRegion>Tai'an</wicri:noRegion></affiliation></author><author><name sortKey="Song, Weiwei" sort="Song, Weiwei" uniqKey="Song W" first="Weiwei" last="Song">Weiwei Song</name><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an</wicri:regionArea><wicri:noRegion>Tai'an</wicri:noRegion></affiliation></author><author><name sortKey="Li, Xiuqi" sort="Li, Xiuqi" uniqKey="Li X" first="Xiuqi" last="Li">Xiuqi Li</name><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an</wicri:regionArea><wicri:noRegion>Tai'an</wicri:noRegion></affiliation></author><author><name sortKey="Feng, Rui" sort="Feng, Rui" uniqKey="Feng R" first="Rui" last="Feng">Rui Feng</name><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an</wicri:regionArea><wicri:noRegion>Tai'an</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Cancan" sort="Yang, Cancan" uniqKey="Yang C" first="Cancan" last="Yang">Cancan Yang</name><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an</wicri:regionArea><wicri:noRegion>Tai'an</wicri:noRegion></affiliation></author><author><name sortKey="Huang, Zhenling" sort="Huang, Zhenling" uniqKey="Huang Z" first="Zhenling" last="Huang">Zhenling Huang</name><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an</wicri:regionArea><wicri:noRegion>Tai'an</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, Chunyuan" sort="Zhu, Chunyuan" uniqKey="Zhu C" first="Chunyuan" last="Zhu">Chunyuan Zhu</name><affiliation wicri:level="1"><nlm:affiliation>Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China; College of Life Sciences, Shandong Agricultural University, Tai'an, China. Electronic address: zhuchunyuan@sdau.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China; College of Life Sciences, Shandong Agricultural University, Tai'an</wicri:regionArea><wicri:noRegion>Tai'an</wicri:noRegion></affiliation></author></analytic><series><title level="j">Biochemical and biophysical research communications</title><idno type="eISSN">1090-2104</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Crystallography, X-Ray (MeSH)</term><term>Fungal Proteins (chemistry)</term><term>Models, Molecular (MeSH)</term><term>Phytophthora (chemistry)</term><term>Protein Conformation (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Conformation des protéines (MeSH)</term><term>Cristallographie aux rayons X (MeSH)</term><term>Modèles moléculaires (MeSH)</term><term>Phytophthora (composition chimique)</term><term>Protéines fongiques (composition chimique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Fungal Proteins</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Phytophthora</term><term>Protéines fongiques</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Crystallography, X-Ray</term><term>Models, Molecular</term><term>Protein Conformation</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Conformation des protéines</term><term>Cristallographie aux rayons X</term><term>Modèles moléculaires</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">RxLR genes are a prominent class of effectors in oomycetes, and almost half of these proteins contain a conserved sequence motif termed the WY domain, that may exist singly, or as divergent tandem repeats in different effectors. Here we describe the crystal structure of PcRxLR12 (63-488) from Phytophthora capsici at 3.0 Å resolution. The structure consists of five tandemly arrayed WY-domains linked to each other by short connecting helices. Superposition of the WY-2 domain on the other four domains of PcRxLR12, show that the first α-helix termed the K motif, and Loop 3 which connects α<sub>3</sub> and α<sub>4</sub> are the key regions of structural divergence between the WY domains. A similar pattern was observed when WY-2 was superposed on the 11 WY domains from other oomycete effectors. We also note that an added connecting helix between WY domains in some RXLR effectors, ensures that the WY domains are oriented in the same direction.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30077372</PMID><DateCompleted><Year>2019</Year><Month>03</Month><Day>15</Day></DateCompleted><DateRevised><Year>2019</Year><Month>03</Month><Day>15</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1090-2104</ISSN><JournalIssue CitedMedium="Internet"><Volume>503</Volume><Issue>3</Issue><PubDate><Year>2018</Year><Month>09</Month><Day>10</Day></PubDate></JournalIssue><Title>Biochemical and biophysical research communications</Title><ISOAbbreviation>Biochem Biophys Res Commun</ISOAbbreviation></Journal><ArticleTitle>Crystal structure of the RxLR effector PcRxLR12 from Phytophthora capsici.</ArticleTitle><Pagination><MedlinePgn>1830-1835</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0006-291X(18)31623-1</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.bbrc.2018.07.121</ELocationID><Abstract><AbstractText>RxLR genes are a prominent class of effectors in oomycetes, and almost half of these proteins contain a conserved sequence motif termed the WY domain, that may exist singly, or as divergent tandem repeats in different effectors. Here we describe the crystal structure of PcRxLR12 (63-488) from Phytophthora capsici at 3.0 Å resolution. The structure consists of five tandemly arrayed WY-domains linked to each other by short connecting helices. Superposition of the WY-2 domain on the other four domains of PcRxLR12, show that the first α-helix termed the K motif, and Loop 3 which connects α<sub>3</sub> and α<sub>4</sub> are the key regions of structural divergence between the WY domains. A similar pattern was observed when WY-2 was superposed on the 11 WY domains from other oomycete effectors. We also note that an added connecting helix between WY domains in some RXLR effectors, ensures that the WY domains are oriented in the same direction.</AbstractText><CopyrightInformation>Copyright © 2018 Elsevier Inc. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Li</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Xiuguo</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Xuefa</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Song</LastName><ForeName>Weiwei</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Xiuqi</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Feng</LastName><ForeName>Rui</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Cancan</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Zhenling</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>College of Plant Protection, Shandong Agricultural University, Tai'an, China; Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Chunyuan</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect, Shandong Agricultural University, Tai'an, China; College of Life Sciences, Shandong Agricultural University, Tai'an, China. Electronic address: zhuchunyuan@sdau.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>08</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Biochem Biophys Res Commun</MedlineTA><NlmUniqueID>0372516</NlmUniqueID><ISSNLinking>0006-291X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005656">Fungal Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018360" MajorTopicYN="N">Crystallography, X-Ray</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005656" MajorTopicYN="N">Fungal Proteins</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008958" MajorTopicYN="N">Models, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011487" MajorTopicYN="N">Protein Conformation</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Crystal structure</Keyword><Keyword MajorTopicYN="Y">Oomycete</Keyword><Keyword MajorTopicYN="Y">Pathogen</Keyword><Keyword MajorTopicYN="Y">Virulence factor</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>07</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>07</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>8</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>3</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>8</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30077372</ArticleId><ArticleId IdType="pii">S0006-291X(18)31623-1</ArticleId><ArticleId IdType="doi">10.1016/j.bbrc.2018.07.121</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Zhao, Li" sort="Zhao, Li" uniqKey="Zhao L" first="Li" last="Zhao">Li Zhao</name></noRegion><name sortKey="Feng, Rui" sort="Feng, Rui" uniqKey="Feng R" first="Rui" last="Feng">Rui Feng</name><name sortKey="Huang, Zhenling" sort="Huang, Zhenling" uniqKey="Huang Z" first="Zhenling" last="Huang">Zhenling Huang</name><name sortKey="Li, Xiuqi" sort="Li, Xiuqi" uniqKey="Li X" first="Xiuqi" last="Li">Xiuqi Li</name><name sortKey="Song, Weiwei" sort="Song, Weiwei" uniqKey="Song W" first="Weiwei" last="Song">Weiwei Song</name><name sortKey="Yang, Cancan" sort="Yang, Cancan" uniqKey="Yang C" first="Cancan" last="Yang">Cancan Yang</name><name sortKey="Zhang, Xiuguo" sort="Zhang, Xiuguo" uniqKey="Zhang X" first="Xiuguo" last="Zhang">Xiuguo Zhang</name><name sortKey="Zhang, Xuefa" sort="Zhang, Xuefa" uniqKey="Zhang X" first="Xuefa" last="Zhang">Xuefa Zhang</name><name sortKey="Zhu, Chunyuan" sort="Zhu, Chunyuan" uniqKey="Zhu C" first="Chunyuan" last="Zhu">Chunyuan Zhu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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